How about this...
assign a construction line from the centre of the motor to a datum/zero hole
do the same for the mount
Like so (and the same for the mounting plate): and use plane coincident (as you already do) and follow with multiparallel constraint for the two construction lines.
That means that even with motor and mounting plate coming from two different sources, as long as you assign the line orientating one hole for the motor and one for the mount than you can use this motor repeatedly in differently orientated mounting plates
Below, before (and notice different orientation of motor and mounting plate) and after pictures: and yes, the holes are aligned and a file: